- CheckRenderer - Class in gate.creole.ontology.ocat
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Description: This class provides the renderer for the Ontology Tree Nodes.
- CheckRenderer(OntologyTreePanel) - Constructor for class gate.creole.ontology.ocat.CheckRenderer
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Constructor
- children() - Method in class com.ontotext.gate.vr.ClassNode
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- children() - Method in interface com.ontotext.gate.vr.IFolder
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- CLASS_NODE_FLAVOR - Static variable in class com.ontotext.gate.vr.ClassNode
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flavor used for drag and drop
- classesToHide - Variable in class gate.creole.ontology.ocat.OntologyViewerOptions
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List of ontology classes to be filtered out.
- classesToShow - Variable in class gate.creole.ontology.ocat.OntologyViewerOptions
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List of ontology classes to be filtered out.
- ClassNode - Class in com.ontotext.gate.vr
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Represents a single class node from the visualized ontology
- ClassNode(Ontology) - Constructor for class com.ontotext.gate.vr.ClassNode
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Constructs a root class node from an ontology
- ClassNode(OClass) - Constructor for class com.ontotext.gate.vr.ClassNode
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Constructs a class node given an ontology class
- ClassNode(OInstance) - Constructor for class com.ontotext.gate.vr.ClassNode
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Constructs a class node given an ontology instance
- ClassNode(MappingNode) - Constructor for class com.ontotext.gate.vr.ClassNode
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Constructs a class node given a mapping node
- cleanup() - Method in class gate.creole.ontology.ocat.OntologyViewer
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Releases all resources and listeners
- cleanup() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Releases all resources
- com.ontotext.gate.vr - package com.ontotext.gate.vr
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- ComboRenderer - Class in gate.creole.ontology.ocat
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Description: This class provides the renderer for the Ontology Tree Nodes.
- ComboRenderer(OntologyTreePanel) - Constructor for class gate.creole.ontology.ocat.ComboRenderer
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Constructor
- contentEdited(DocumentEvent) - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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- createInstance - Variable in class gate.creole.ontology.ocat.AnnotationEditor
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- createRootNode(Ontology) - Static method in class com.ontotext.gate.vr.ClassNode
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create a structure representing the class hierarchy of an ontology
- createRootNode(Ontology, boolean, boolean) - Static method in class com.ontotext.gate.vr.ClassNode
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- createRootNode(Ontology, MappingDefinition, Map<String, ClassNode>) - Static method in class com.ontotext.gate.vr.ClassNode
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Creates a structure representing the class hierarchy of an ontology and
the gazetteerLists mapped to it.
- currentOntologyTree - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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Instance of JTree used to store information about ontology classes
- currentOResource2ColorMap - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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Current ontologyColorScheme
- currentOResource2IsSelectedMap - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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Class Selection map for the current ontology
- currentOResourceName2AnnotationsListMap - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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Current Annotation Map that stores the annotation in arraylist for each
concept
- currentProperties - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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Class Selection map for the current ontology
- currentPropValuesAndInstances2ClassesMap - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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instances of the ontology and their classes
- gate.creole.ontology.ocat - package gate.creole.ontology.ocat
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- Gaze - Class in com.ontotext.gate.vr
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Gaze is a Gazetteer VR capable of viewing and editing
gazetteer lists, linear definitions (lists.def files),
and mapping definitions (mappings between ontology classes and gazetteer lists).
- Gaze() - Constructor for class com.ontotext.gate.vr.Gaze
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- GeneralEditorException - Exception in com.ontotext.gate.vr
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A general editor exception
- GeneralEditorException(String) - Constructor for exception com.ontotext.gate.vr.GeneralEditorException
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- getAllClassNames() - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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- getAllInstanceNames() - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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- getAnnotationSet(Annotation) - Method in class gate.creole.ontology.ocat.OntologyViewer
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Given an annotation, this method tells which selectedAnnotationSetName it
belongs to.
- getChild(int) - Method in class com.ontotext.gate.vr.ClassNode
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- getChild(int) - Method in interface com.ontotext.gate.vr.IFolder
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- getChild(Object, int) - Method in class com.ontotext.gate.vr.OntoTreeModel
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- getChildCount() - Method in class com.ontotext.gate.vr.ClassNode
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- getChildCount() - Method in interface com.ontotext.gate.vr.IFolder
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- getChildCount(Object) - Method in class com.ontotext.gate.vr.OntoTreeModel
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- getChildren() - Method in class com.ontotext.gate.vr.ClassNode
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- getChildren() - Method in interface com.ontotext.gate.vr.IFolder
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- getClassesToHide() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Gets a set of ontology classes disabled in the OCAT.
- getClassesToHideFileURL() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Gets the URL of the filter file being used.
- getClassesToShow() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Gets a set of ontology classes disabled in the OCAT.
- getClassesToShowFileURL() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Gets the URL of the filter file being used.
- getClassFeatureValue(Annotation, OntologyViewerOptions) - Static method in class gate.creole.ontology.ocat.Utils
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Given an Annotation this method gets the value of
gate.creole.ANNIEConstants.LOOKUP_CLASS_FEATURE_NAME feature.
- getColumnCount() - Method in class gate.creole.ontology.ocat.FeaturesEditor.FeaturesTableModel
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- getColumnName(int) - Method in class gate.creole.ontology.ocat.FeaturesEditor.FeaturesTableModel
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- getCurrentOntology() - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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Returns the current ontology
- getDeleteConfirmation() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Returns if Child Feature is set to ON/OFF
- getFirstNode(String) - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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This method finds out the ClassNode node in the ontology Tree for given
class
- getGUI() - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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returns the currentOntologyTree Panel
- getGUI() - Method in class gate.creole.ontology.ocat.OntologyViewer
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gets the main tabbed pane that will be displayed as the OCAT component
- getGUI() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Returns the panel for ontoOption Panel
- getHighlightColor(String) - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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Returns the associated color for the given class
- getHighlighter() - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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Returns the instance of highlighter
- getIndexOfChild(Object) - Method in class com.ontotext.gate.vr.ClassNode
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- getIndexOfChild(Object) - Method in interface com.ontotext.gate.vr.IFolder
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- getIndexOfChild(Object, Object) - Method in class com.ontotext.gate.vr.OntoTreeModel
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- getInstanceFeatureValue(Annotation, OntologyViewerOptions) - Static method in class gate.creole.ontology.ocat.Utils
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Given an Annotation this method gets the value of
gate.creole.ANNIEConstants.LOOKUP_INSTANCE_FEATURE_NAME feature.
- getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class gate.creole.ontology.ocat.ComboRenderer
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Renderer method
- getNode(String) - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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This method finds out the ClassNode node in the ontology Tree for given
class
- getOntologyViewerOptions() - Method in class gate.creole.ontology.ocat.OntologyViewer
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A method that returns the instance of ontology viewer options.
- getPreferredSize() - Method in class gate.creole.ontology.ocat.AnnotationEditor.CustomScroller
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- getPropertyName() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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- getRoot() - Method in class com.ontotext.gate.vr.OntoTreeModel
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- getRowCount() - Method in class gate.creole.ontology.ocat.FeaturesEditor.FeaturesTableModel
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- getSelectedAnnotationSetName() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Returns the currently selected Annotation Set
- getSelectedAnnotationType() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Returns the currently selected Annotation Type
- getSelectedClassURIFeatureName() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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- getSelectedInstanceURIFeatureName() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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- getSource() - Method in class com.ontotext.gate.vr.ClassNode
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Gets the Source object
- getTable() - Method in class gate.creole.ontology.ocat.FeaturesEditor
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- getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class gate.creole.ontology.ocat.FeaturesEditor.FeatureEditorRenderer
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- getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class gate.creole.ontology.ocat.FeaturesEditor.FeatureEditorRenderer
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- getTransferData(DataFlavor) - Method in class com.ontotext.gate.vr.ClassNode
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- getTransferDataFlavors() - Method in class com.ontotext.gate.vr.ClassNode
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- getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class gate.creole.ontology.ocat.CheckRenderer
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Renderer method
- getTreePath(IFolder) - Method in class gate.creole.ontology.ocat.OntologyTreeListener
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This method is to find out the path for this node from the root of the tree
- getType() - Method in class gate.creole.ontology.ocat.OntologyViewer
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- getValueAt(int, int) - Method in class gate.creole.ontology.ocat.FeaturesEditor.FeaturesTableModel
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- gridBagLayout1 - Variable in class com.ontotext.gate.vr.Gaze
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- gridBagLayout2 - Variable in class com.ontotext.gate.vr.Gaze
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- gridBagLayout3 - Variable in class com.ontotext.gate.vr.Gaze
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- gridBagLayout4 - Variable in class com.ontotext.gate.vr.Gaze
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- ontology2ColorSchemesMap - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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Stores various color schemes for different ontology classes
- ontology2OntoTreeModels - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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Stores all the various ontology2OntoTreeModels for different ontologies
- ontology2OResourceSelectionMap - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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This stores Class selection map for each individual loaded ontology
- ontology2PropertiesMap - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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This stores Class selection map for each individual loaded ontology
- ontology2PropValuesAndInstances2ClassesMap - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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This stores instances and the classes that instance belongs to
- ontologyBar - Variable in class com.ontotext.gate.vr.Gaze
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- ontologyLabel - Variable in class com.ontotext.gate.vr.Gaze
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- ontologyModified(Ontology, OResource, int) - Method in class com.ontotext.gate.vr.Gaze
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- ontologyModified(Ontology, OResource, int) - Method in class gate.creole.ontology.ocat.OntologyViewer
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- ontologyPanel - Variable in class com.ontotext.gate.vr.Gaze
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- ontologyReset(Ontology) - Method in class com.ontotext.gate.vr.Gaze
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- ontologyReset(Ontology) - Method in class gate.creole.ontology.ocat.OntologyViewer
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- ontologyScroll - Variable in class com.ontotext.gate.vr.Gaze
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- OntologyTreeListener - Class in gate.creole.ontology.ocat
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Description: This class listens events on tree selection
- OntologyTreeListener(OntologyTreePanel) - Constructor for class gate.creole.ontology.ocat.OntologyTreeListener
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Constructor
- ontologyTreePanel - Variable in class gate.creole.ontology.ocat.AnnotationEditor
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- OntologyTreePanel - Class in gate.creole.ontology.ocat
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This class provides a GUI frame for the OCAT tool, where one of the
components is the OntologyTree, the other one is Ontology Options and so on.
- OntologyTreePanel(OntologyViewer) - Constructor for class gate.creole.ontology.ocat.OntologyTreePanel
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Constructor
- OntologyViewer - Class in gate.creole.ontology.ocat
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In this class we implement the basic structure of the ontology viewer Which
includes the total ontologies that has been loaded in the system option for
the new ontology, if someone wishes to load it into the system the ontology
viewer (which displays all the conetps) Ontology instance viewer and the
instance attribute viewer
- OntologyViewer() - Constructor for class gate.creole.ontology.ocat.OntologyViewer
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- ontologyViewerOptions - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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OntologyViewerOptions instance
- OntologyViewerOptions - Class in gate.creole.ontology.ocat
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Description: This class Provides options window to set the options for
Ontology Viewer
- OntologyViewerOptions(OntologyTreePanel) - Constructor for class gate.creole.ontology.ocat.OntologyViewerOptions
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Constructor
- ontoTreeListener - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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OntologyTreeListener that listens to the selection of ontology classes
- OntoTreeModel - Class in com.ontotext.gate.vr
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A Tree Model used for the tree view of an ontology.
- OntoTreeModel(IFolder) - Constructor for class com.ontotext.gate.vr.OntoTreeModel
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- ontoViewer - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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Instance of ontology Viewer
- oTree - Variable in class com.ontotext.gate.vr.Gaze
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- scroller - Variable in class gate.creole.ontology.ocat.AnnotationEditor
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- scrollerPanel - Variable in class gate.creole.ontology.ocat.AnnotationEditor
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- selectedAnnotationSetName - Variable in class gate.creole.ontology.ocat.OntologyViewerOptions
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Currently selected annotationSetName
- selectedAnnotationType - Variable in class gate.creole.ontology.ocat.OntologyViewerOptions
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Currently selected annotation type
- setChildren(Vector<ClassNode>) - Method in class com.ontotext.gate.vr.ClassNode
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- setClassesToHide(HashSet<String>) - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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This method should be called to specify the ontology classes that should be
disabled from the ocat.
- setClassesToHideFileURL(URL) - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Sets the filter file to be used.
- setClassesToHideOn(boolean) - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Use this method to switch on and off the filter.
- setClassesToShow(HashSet<String>) - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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This method should be called to specify the ontology classes that should be
disabled from the ocat.
- setClassesToShowFileURL(URL) - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Sets the filter file to be used.
- setClassesToShowOn(boolean) - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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Use this method to switch on and off the filter.
- setColor(String, Color) - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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- setColorScheme(IFolder, HashMap<String, Color>) - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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For every ontology it generates the colors only once at the begining which
should remain same throughout the programe
- setMousePoint(Point) - Method in class gate.creole.ontology.ocat.AnnotationEditor
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Sets the mouse point
- setOntoTreeClassSelection(IFolder, HashMap<String, Boolean>) - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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This is to initialise the classSelection as false to all the classes
- setSchema(AnnotationSchema) - Method in class gate.creole.ontology.ocat.FeaturesEditor
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- setSelected(String, boolean) - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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This method select/deselect the classes in the classSelectionMap
- setSource(Object) - Method in class com.ontotext.gate.vr.ClassNode
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Sets the source object
- setTarget(Object) - Method in class com.ontotext.gate.vr.Gaze
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Called by the GUI when this viewer/editor has to initialise itself for a
specific object.
- setTargetFeatures(FeatureMap) - Method in class gate.creole.ontology.ocat.FeaturesEditor
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- setTextLocation(int) - Method in class gate.creole.ontology.ocat.AnnotationEditor
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- setValueAt(Object, int, int) - Method in class gate.creole.ontology.ocat.FeaturesEditor.FeaturesTableModel
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- shouldShow(String) - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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- showAnonymousClasses() - Method in class gate.creole.ontology.ocat.OntologyViewerOptions
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- showEmptyOntologyTree() - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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A method to show an empty ontology tree
- showingAnnotationWindow - Variable in class gate.creole.ontology.ocat.OntologyTreePanel
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Indicates whether the annotation window is being shown or not
- showOntologyInOntologyTreeGUI(Ontology, HashMap<String, ArrayList<Annotation>>) - Method in class gate.creole.ontology.ocat.OntologyTreePanel
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This method is used to plot the ontology on the tree and generate/load the
respective data in the memory
- SIZE_X - Static variable in class com.ontotext.gate.vr.Gaze
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size x when running from the tools menu
- SIZE_Y - Static variable in class com.ontotext.gate.vr.Gaze
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size y when running from the tools menu
- soelAction - Variable in class gate.creole.ontology.ocat.AnnotationEditor
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- soelBtn - Variable in class gate.creole.ontology.ocat.AnnotationEditor
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- soerAction - Variable in class gate.creole.ontology.ocat.AnnotationEditor
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- soerBtn - Variable in class gate.creole.ontology.ocat.AnnotationEditor
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- synchronizeTreeExpansion(JTree, JTree) - Static method in class com.ontotext.gate.vr.Gaze
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Synchronizes the expansion of the given trees.